Boutique hotels in Thousand Islands

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Top-rated boutique hotels in Thousand Islands

Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

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Guest favourite
A spacious sleeping area is enhanced by a wooden ceiling, creating an inviting ambiance. Large glass doors open to a balcony, allowing natural light to fill the room. A bedside table holds a potted plant, and a soft area rug complements the flooring.
Hotel room in Clayton
4.94 out of 5 average rating, 111 reviews

Island Bay Waterfront Captains Suite

Our one of a kind location is nested right on the edge of the Village of historic Clayton, with our upstairs studio style suite overlooking our waterfront lawn and dock area, unique with great views and centrally located right in the heart of the 1000 islands area. New from top to bottom with all amenities and private balcony with dockage right in front available, a boaters dream! King size bedroom with Full kitchenette with all the essentials with full 2 couch living area with modern amenities!

Guest favourite
A spacious bedroom features a large, neutral-toned bed and matching light wood nightstands. A decorative woven wall piece is positioned above the bed, with a soft area rug delineating the space. Natural light fills the room, aided by minimal window coverings.
Hotel room in Clayton
4.81 out of 5 average rating, 16 reviews

Island Bayside "Getaway Grotto" room

Our ”Fisherman’s Grotto” unit is right on the edge of the Village of historic Clayton, our downstairs unit overlooks our waterfront lawn and dock, unique with great views and located right in the heart of the 1000 islands area. New from top to bottom with all amenities, Smart tv, WiFi, heated towel rack,deck and patio, dockage right in front available for extra charge, a boaters dream! Super comfortable King size bed with all the essentials, enjoy a hot Keurig coffee as well as microwave/fridge

The cozy bedroom features a queen-sized bed with a quilted gray coverlet. A wooden cabinet and coffee maker are positioned nearby. The room is illuminated by two table lamps on either side. A large area rug with floral patterns covers the dark wooden floor.
Hotel room in Gananoque
4.92 out of 5 average rating, 38 reviews

The Frederick Suite – Stonewater Manor B&B

Welcome to the Frederick Suite at the Stonewater Manor B&B. We are located 2 minutes from the Gananoque Boat Lines Thousand Islands Tours dock, the Arthur Child and Antique Boat Museums, the beach and Joel Stone Park and the 1000 Islands Playhouse. Our Frederick Suite is a cozy room that has good views of the Gananoque harbour and St. Lawrence River. This season, as a more Covid friendly option, we are offering continental breakfasts served to your room, included in the rate for your stay.

Guest favourite
A well-lit room features a large window with a view of greenery, complemented by a wooden ceiling. A compact kitchenette is equipped with a coffee maker and a small refrigerator. A comfortable chair is positioned near the window, and a cozy bed adds to the inviting space.
Hotel room in Clayton
4.9 out of 5 average rating, 105 reviews

Island Bay Waterfront -River View Room

Welcome to the Island Bay stays! Right on the edge of Historic Clayton NY, enjoy our super newly renovated waterfront “Aparthotel” style stay! Our elevated well insulted rooms and suite apartments have all the newest amenities to keep you connected and even better yet, disconnecting and relaxing to take in the 1000 islands by land or boat! Centrally located, less than a 10 min walk to downtown, Dockage available, with boat ramp and Clayton Marina and boat rentals right across the way!

Guest favourite
A modern bedroom features a spacious bed dressed in crisp white linens and navy accents. Elegant wall finishes and built-in storage complement the design, while large windows allow natural light to illuminate the room. A comfortable chair sits invitingly in the corner.
Hotel room in Prince Edward
5 out of 5 average rating, 9 reviews

Cribs on Main- Picton Hotel - Suite 1

Suite 1 spans 414 sq ft, featuring a luxurious king-sized bed and radiant floor heating. Indulge in the deep soaker bathtub, walk-in shower, and separate water closet. Enjoy the workstation or unwind in front of the 75" smart TV with streaming services. Admire the custom finishes and use the mini-bar for your convenience. Overlooking Main Street for a charming view, Suite One has dreamy decor, evoking your favourite southern beach vacation spot. Sit back, relax, and enjoy your stay.

Guest favourite
A modern hotel suite features a spacious bed flanked by soft lighting. A 75-inch television is mounted on the wall across from the bed, with a sleek entertainment console below. A wall-mounted electric fireplace adds warmth, and a window offers natural light with a view.
Hotel room in Prince Edward
4.94 out of 5 average rating, 16 reviews

Cribs on Main-Picton Hotel - Suite 7

Suite 7 boasts 447 sq ft featuring a king bed, radiant floor heating, ambient fireplace, walk-in shower with a window open to the bedroom (with a privacy blind), a separate water closet, work station, a 75" smart tv and a mini-bar. Room 7 is "barrier friendly," offering a lift from the ground to the second floor and accessibility features throughout. These include wider-than-standard doors, a curbless shower, a chair-height vanity, a slide-in shower, and an available shower stool.

Top guest favourite
The modern kitchen showcases light blue cabinetry with gold hardware and a white countertop. A stylish sink is placed beneath a decorative light fixture, accompanied by a countertop blender, kettle, and coffee maker. Above, a piece of wall art adds a touch of color.
Hotel room in Prince Edward
4.95 out of 5 average rating, 111 reviews

Beautifully designed suite on Wellington Main ST.

This stylish studio is close to all the must-see destinations in PEC! Steps away from the best restaurants and shopping in Wellington, just a short walk to the beach or Millennium trail. This beautiful suite comes equipped with a full kitchen and laundry, spacious private deck overlooking Main Street and is right above the Creekside Cafe. Our small boutique hotel has two guests suites so please inquire if you require more space. STA licence # ST-2021-0229

Guest favourite
A sun-filled common area is furnished with two stylish chairs and a couch, creating a relaxed seating arrangement. A wooden coffee table sits in the center, complemented by a green plant and a desk lamp. Large windows allow natural light to brighten the space.
Hotel room in Prince Edward
4.9 out of 5 average rating, 84 reviews

Biglake Stay: Scene 2

Stylish, private and centrally located hotel style suite in the heart of Wellington. Kitchenette and sitting room in a shared lobby. Steps to some of the best restaurants, bars and cafes in the County. The perfect launch pad for your visit to the County, the suite has a bright spa-like ensuite and luxuriously comfortable Queen bed. The perfect ensuite Queen room to retreat to after a day visiting the amazing PEC wineries, shops and beaches.

Superhost
A sun-filled common area features two comfortable sofas facing a modern coffee table. Plants are placed on the table and beside a wooden desk near large windows, providing ample natural light. The room is characterized by a bright and airy ambiance.
Hotel room in Prince Edward
4.84 out of 5 average rating, 99 reviews

Biglake Stay: Scene 1

Stylish, private and centrally located hotel style suite in the heart of Wellington. Kitchenette and sitting room in a shared lobby. Steps to some of the best restaurants, bars and cafes in the County. The perfect launch pad for your visit to the County, the suite has a bright spa-like ensuite and luxuriously comfortable Queen bed. The perfect ensuite Queen room to retreat to after a day visiting the amazing PEC wineries, shops and beaches.

A well-maintained garden showcases a variety of colorful flowers, including orange and yellow blooms. A patio area with seating is visible in front of the mansion's entrance, surrounded by lush greenery and a welcoming stone pathway leading to the main door.
Hotel room in Gananoque
4.76 out of 5 average rating, 51 reviews

The Peninsula Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Peninsula Room is a light and cozy room that features a twin bed and an ensuite half bathroom. A private shower is available outside of the bedroom on the first floor.

Superhost
A comfortable sleeping area is presented with a spacious bed dressed in soft white linens. Two light-colored nightstands are positioned on either side, each featuring a lamp. A serene painting of sailboats is hung above the bed, offering a calming visual element.
Hotel room in Wolfe Island
4.55 out of 5 average rating, 20 reviews

Room 9 - Economy Room

Room 9 is a small yet economical and comfortable option. While it offers a roof view, guests are welcome to enjoy the shared spaces within our hotel. This basic room is ideal for weary travelers or budget-conscious guests. It includes a private ensuite bathroom and a mini fridge. Guests get free parking and complimentary Wi-Fi. Please note: None of our hotel rooms have a TV, but guests are welcome to stream content on their devices.

Guest favourite
A light-filled living area is presented, featuring a modern blue refrigerator and a comfortable gray sofa. A round coffee table holds a selection of fresh fruits, cheese, and a bottle of sparkling wine with two glasses, creating an inviting space for relaxation.
Hotel room in Prince Edward
4.97 out of 5 average rating, 158 reviews

Beautiful boutique suite best location.

Our stylish studio is the perfect place to enjoy the best Prince Edward County has to offer. Our suites are just upstairs from the county's newest brunch hotspot Creekside Cafe where you can enjoy breakfast/ lunch/brunch & cocktails daily from 8-2pm. Located just off of Main Street in Wellington you are steps away from the Midtown Brewing Company, Piccolina Marcatto, and Drake Devonshire. STA license # ST-2021-0229

Popular amenities for Thousand Islands boutique hotels