
Boutique hotels in Shinjuku
Find and book unique boutique hotels on Airbnb
Quick stats about boutique hotels in Shinjuku

Total holiday rentals
Explore 20 holiday rentals in Shinjuku

Nightly prices starting at
Shinjuku holiday rentals start at $51 SGD per night before taxes and fees

Verified guest reviews
Over 1,230 verified reviews to help you choose

Wifi availability
20 of Shinjuku holiday rentals include wifi access

Popular amenities for guests
Guests love Kitchen, Wifi and Pool across Shinjuku rentals

4.7 Average rating
Shinjuku stays receive an average rating of 4.7 out of 5 from guests

Nearby attractions
Shinjuku’s top spots include Shin-Okubo Station, Lumine the Yoshimoto and Higashi-Shinjuku Station
Top-rated boutique hotels in Shinjuku
Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

The Hideout Tokyo -(Double Room)-
We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government
ValueLocationCheckout
4.89 out of 5 average rating, 913 reviews
Keyakian Danran Tatami, traditional Japanese style
Our room is featured real Japanese style. Many Japanese also love this simple and traditional space. It'll be chance to know real Japan! 3 subway 5 mins walk. Tukiji 5 mins by subway, Ginza, Akiba, Asakusa, 15mins by subway without transfer. Here is popular for large family trip. We have 3 separate room with bed and FUTON. Especially family with kids can choose many baby equipment. From NARITA Airport 55 min, HANEDA 25min. We can store your luggage before check-in or after check-out for free!
ValueLocationAccess
4.93 out of 5 average rating, 122 reviews
DOMO HOTEL-1
DOMO HOTEL is located in the Shinjuku area, within walking distance of JR Shin-Okubo Station and Shinjuku Station. A convenience store can be reached in 30 seconds. There are many chain restaurants, cafes, post offices and drug stores around the hotel, taking care of the needs of tourists in every possible way. In order to provide travelers with a brand-new accommodation experience, the hotel has only 12 rooms. From the moment you step into the hotel door, an unprecedented journey begins quietly
ValueLocationLayout
4.84 out of 5 average rating, 81 reviews
Standard Room|Accessible|20mShinjuku|Kagurazaka
Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.
LocationValueBathroom
4.89 out of 5 average rating, 119 reviews
8 min to Yamanote Line | 3BR Family Suite | 49㎡
A stylish apartment hotel in Ueno area. It blends warm soft green walls, and bold red doors, accented with artwork for a stylish yet welcoming atmosphere. Features separate bedrooms, a spacious living room, a compact kitchen, and a bathroom with separate wet and dry areas. Located near JR Okachimachi stations, with Ameyoko Market and Shinobazu Pond just a short walk away. About a 12-minute walk to Keisei Ueno Station. The famous cherry blossom spot, Ueno Park, is just a 14-minute walk away.
ValueFamilyLong stay
4.93 out of 5 average rating, 243 reviews
④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes
Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!
FamilyValueOutdoor spaces
4.97 out of 5 average rating, 248 reviews
Luxury Art Penthouse | Tokyo Bay Ocean View |10pax
Welcome to Art House 日の出, one-of-a-kind penthouse overlooking spectacular Tokyo Bay.Created by visionary creators and architects, this top-floor private residence, which blends contemporary art with traditional Japanese aesthetics, just opened in January 2026 as an immersive space.This entire 87㎡ floor is reserved exclusively for your family, group of friends (up to 10 guests). Designed as a “Art Gallery Hotel” offers a premium, memorable stay beyond the ordinary accommodation experience.
LocationValueAmenities
5.0 out of 5 average rating, 33 reviews
Art Room "Into the Foreign" | 1 min to Koenji Stn
BnA Hotel Koenji is an independent art hotel by the Bed & Art Project. Every room is built by a Japanese artist with architects, textile designers and carpenters — you sleep inside the art, not near it. 2F room "Into the Foreign" is by Yohei Takahashi, a live painter who lets the brush move freely and turns its accidental lines into vivid animals. Here he chose wolves: a dark forest that opens up to reveal a pack bursting out into the world. Our bar downstairs runs pop-ups most weeks.
FamilyValueCheck-in
4.94 out of 5 average rating, 156 reviews
12-min walk to Sensoji - Boutique Hotel
一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.
LocationValueComfort
4.86 out of 5 average rating, 332 reviews
3 mins to Subway |Quad room with 2 double beds
I GO HOTEL is in central Shinjuku, a 3-minute walk to Higashi-Shinjuku Station (Fukutoshin Line, Exit B1) and 5 minutes to the Oedo Line, with direct access to Shibuya, Harajuku, Ikebukuro, and Roppongi. Shin-Okubo Station, Seibu-Shinjuku Station, Okubo Station, and Shinjuku Station are within walking distance. Near Kabukicho and Shin-Okubo, with 24-hour convenience stores, restaurants, drugstores, and Don Quijote nearby. Central yet quiet.
LocationFamilyAir conditioning
4.77 out of 5 average rating, 119 reviews
TheMillennialsShibuya/Mixed Smart Pod/1 Guest
Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.
ValueLocationParks
4.81 out of 5 average rating, 171 reviews
Pegasus Hotel (Japanese room for 3) 302
Hi This is Pegasus Hotel New open in 2020, we have two types of standard double rooms and family rooms. The environment is clean and tidy. It is a three-minute walk from Asakusa Bridge Station. , Every year will have Sumidagawa Fireworks Festival, Japanese traditional culture boat house you also can have a nice dinner in the boat, you can have a good time in nearby Tokyo Bay Odaiba Rainbow Bridge, etc.
LocationFamilyQuiet
4.76 out of 5 average rating, 245 reviewsPopular amenities for Shinjuku boutique hotels
Family-friendly boutique hotels

3 mins to Subway | Rare Triple Room | Balcony
LocationValueCleanliness
4.6 out of 5 average rating, 10 reviews
Hotel Suite | 7 min JR Shin-Okubo | 4 min Subway
LocationValueAccuracy
4.75 out of 5 average rating, 40 reviews
Newly opened hotel-style t suite Subway 3 minutes
ValueLocationAmenities
4.75 out of 5 average rating, 67 reviews
Tabiji Shibuya | 10 min walk from Shibuya station
FamilyLocationNearby
4.94 out of 5 average rating, 36 reviews
【Ginza/Tokyo】 Junior Suite /Hotel Vintage Tsukiji
ValueFamilyAmenities
4.78 out of 5 average rating, 858 reviews
No Service Hotel 301 / 7 min to Asakusa
LocationCheckoutParks
4.98 out of 5 average rating, 44 reviews
Standard Twin Room Max4 Comfort2, Non Smoking
LocationHeatingWalkability
4.86 out of 5 average rating, 14 reviews
Ueno Suite for 6 | 1 Min to Subway | Near Ameyoko
FamilyLocationQuiet
4.98 out of 5 average rating, 89 reviewsBoutique hotels with a patio

Washing Machine, Apartment Suite, 5 Min Walk to Skytree Station, Direct Access to Airport, Kitchen, Nearby Izakaya, Amin Hotel
ValueLocationAccuracy
4.71 out of 5 average rating, 21 reviews
TheMillennialsShibuya/Smart Pod Girls Only/1 Guest
LocationValueComfort
4.77 out of 5 average rating, 13 reviews
8 min to Yamanote Line | 6 Guests | 45㎡ | 2BR
FamilyLocationAir conditioning
4.91 out of 5 average rating, 35 reviews
5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel
LocationAccessDecor
4.6 out of 5 average rating, 10 reviews
5 min walk to Skytree Station, 100 inch projection screen in the movie room, direct access to the airport, kitchen, washing machine, bathtub
ValueLocationView
4.56 out of 5 average rating, 16 reviewsOther boutique hotel holiday rentals

[1]2min walk Sta丨Shinjuku area丨free WIFI丨Single丨
LocationValueIndoor spaces
4.76 out of 5 average rating, 221 reviews
4 single beds in Tokyo/2 train stations: Studio B
ValueLocationCondition
4.82 out of 5 average rating, 802 reviews
Newly opened hotel-style t suite Subway 3 minutes
ValueLocationWalkability
4.73 out of 5 average rating, 49 reviews
Shinjuku Ice guestroom 3 (shared B&T Free wifi)
LocationValueGetting around
4.63 out of 5 average rating, 16 reviews
3 mins to Subway | Rare Triple Room | Balcony
LocationValueNearby
4.66 out of 5 average rating, 80 reviews
4 min Sta.|6 Guests|2 Double+1 Single+Sofa|Asakusa
FamilyLocationNearby
5.0 out of 5 average rating, 7 reviews
Close to Shinjuku, Shibuya, and Harajuku. Stylish Brooklyn Style The Standard Apartment, Sasazuka, Shibuya F Room
ValueLocationCleanliness
4.75 out of 5 average rating, 72 reviews
Shinjuku 10mins! Relaxing room max 4ppl!
ValueLocationBathroom
4.61 out of 5 average rating, 192 reviewsWhen is the best time to visit Shinjuku?
| Month | Jan | Feb | Mar | Apr | May | Jun | Jul | Aug | Sept | Oct | Nov | Dec |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg. price | $100 SGD | $97 SGD | $121 SGD | $122 SGD | $97 SGD | $65 SGD | $88 SGD | $80 SGD | $93 SGD | $119 SGD | $122 SGD | $110 SGD |
| Avg. temp | 6°C | 7°C | 10°C | 15°C | 19°C | 22°C | 26°C | 27°C | 24°C | 18°C | 13°C | 8°C |
Destinations to explore
- Waterfront rentals Shinjuku
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- Tokyo Sta.
- Shibuya Station
- Tokyo Disneyland
- Asakusa Sta.
- Shimo-Kitazawa Sta.
- Ikebukuro
- Akihabara Sta.
- Tokyo Disney Resort
- Tokyo Skytree
- Nippori Sta.
- Ueno Sta.
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- Yokohama Sta.
- Tokyo Tower
- Kinshicho Sta.
- Hakone-Yumoto Sta.
- Kita-Senju Sta.
- Omiya Sta.
- Shinagawa
- Otsuka Station
- Yoyogi Park
- Akabane Sta.
- Tokyo Dome
- Things to do Shinjuku
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