Boutique hotels in San Juan Islands

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in San Juan Islands

Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

1 of 1 pages1 / 1
Guest favourite
A modern guesthouse features a sloped roof and wooden exterior, set against a backdrop of tall evergreen trees. Large glass doors provide a view into the interior, blending harmoniously with the natural surroundings.
Hotel room in Friday Harbor
4.97 out of 5 average rating, 116 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Guest favourite
Hotel room in Victoria
4.89 out of 5 average rating, 132 reviews

Petal Studio, Heritage Manor near DT, Free Parking

The Petal Studio at Larkspur Manor Suite is a bright and cozy studio designed for simplicity and comfort. It's ideal for solo travelers or couples. It features a queen bed, sitting area, kitchen, and a private bathroom. Situated in the historic Fairfield neighbourhood, the studio is near Cook Street Village, Beacon Hill Park, Downtown, waterfront, restaurants, cafe, and tourist attractions. Whether it's for short or long stays, this studio offers the comfort of a home away from home.

Guest favourite
A vibrant room features a spacious bed adorned with a floral quilt, complemented by a cozy seating area with a gray sofa. Natural light flows through two windows, and decorative lamps illuminate handcrafted wooden trim. A colorful area rug adds warmth to the wood flooring.
Hotel room in Friday Harbor
5 out of 5 average rating, 17 reviews

Pine room at Juniper Lane 2 beds

Our Pine room is perfect for two people traveling together that want their own beds and a little more privacy, with the separate bathroom, located just a few feet across from your door. The room has a queen bed as well as a twin bunk (the twin beds are built into the wall with beams and are solid and independent of each other). The Pine room has a lovely view of the valley, beautifully handcrafted trim details made of rare, high altitude old-growth cedar, and knotty pine wainscoting.

Superhost
A charming green exterior is displayed, surrounded by vibrant lavender landscaping. A pathway of pebbles leads to the entrance, and a wooden deck shows seating options under the shade of trees. The inviting atmosphere offers a sense of peace amidst the well-kept garden.
Hotel room in Sequim
4.83 out of 5 average rating, 18 reviews

Hideaway Fireplace Room with King Bed and Hot Tub

A room in our boutique hotel on the side of a 7-acre waterfront property, with private beach access! Look out at the Olympic Mountains as you enjoy the wood burning fireplace , or sit in your spa robe on your own patio looking out to the water. This studio has a kitchenette (fridge, microwave, coffee maker). King bed and euro lounger, walk-in shower. Our property also has a shared gazebo, a mini-shopping mart (for guests only), and an electric vehicle charging station if you need.

Superhost
A spacious sleeping area features a quilted bedspread over a queen bed, with natural light filtering through a nearby window dressed with a checkered curtain. A wooden bench sits at the foot of the bed, while a doorway leads to a private bathroom.
Hotel room in Port Townsend
5 out of 5 average rating, 4 reviews

Charming Private Cottage in Downtown!

Uniquely designed, classic woods and wicker furnishings blend with modern amenities. An electric fireplace and jetted tub add to interior design. A private patio provides views of Port Townsend Bay. One queen bed, full bath with a jetted tub, and private parking beside the cottage. Located in the heart of Port Townsend's cultural and historic district, the Swan Hotel is adjacent to Point Hudson Marina and just steps away from educational programs at the Northwest Maritime Center.

Top guest favourite
The hot tub is framed by natural wood beams, with light filtering through the surrounding trees, creating a warm ambiance. The gentle ripples of the water reflect the soft illumination from the nearby residence, enhancing the serene outdoor space.
Hotel room in Cobble Hill
5 out of 5 average rating, 182 reviews

Hot Tub, Sauna, Luxury. Welcome to Lavender View!

Serenity and quality abound. We want your stay at Lavender View to be EXCEPTIONAL. We offer luxurious accommodation in a resort-like setting on 2.5 acres. We take care of the fine details so you can simply relax and enjoy. We use the Airbnb platform exclusively to handle all of our reservations. However, we encourage you to visit our own website (Lavenderview dot ca). The “Book Now” button will take you back to this Airbnb listing to make your reservation.

A cozy room features a wooden bunk bed with comfortable mattresses and a chair positioned by a large window. Natural light brightens the space, showcasing the earthy tones of the furnishings and the inviting view of greenery outside.
Hotel room in Friday Harbor
4.51 out of 5 average rating, 119 reviews

Wayfarers Guest House. Private, driftwood bunks #3

Thank you for finding the Wayfarers Rest, providing comfortable and convenient lodging for active travelers since 1999. Room 3 is a private room that can sleep up to 3, all linens provided. The common areas you will share with other guests (fully equipped kitchen, dining, living room and bathrooms) Wayfarers Rest is located just 4 blocks from the ferry terminal and two blocks from main St., easy walking. Free Wi-Fi, parking & chicken eggs. Pet friendly

Guest favourite
A wooden staircase descends towards a calm shoreline, offering views of gentle waves lapping against pebbles. The landscape showcases a vast body of water that reflects the clear blue sky, creating a serene and inviting atmosphere.
Hotel room in Sequim
4.9 out of 5 average rating, 209 reviews

Lavender Cabin, Pvt Beach & View, Firepit (#4)

Cottage #4: Lavender Cottage • Views: Enjoy sunsets, seals, herons, and eagles soaring over the harbor. • Beach Access: Trail to private beach & kayak rentals right outside. • Amenities: Small kitchen, serene lavender surroundings, and a loveseat or bed for relaxation. • Location: Minutes from Lavender Farms, Game Farm, and 15 mins to town. • Panoramic Views: Relax and take in the beauty through large windows. •. This is a studio cabin

Superhost
A spacious room features a large bed with decorative pillows against a backdrop of textured dark wallpaper. A mirror reflects the light from a nearby window adorned with elegant drapes. A vase with orange flowers rests on a small table, and a chair is positioned nearby.
Hotel room in Victoria
4.86 out of 5 average rating, 132 reviews

King Suite With Castle views

The Craigmyle is a heritage building. Elegant, inviting, and completely unique – The Craigmyle redefines boutique hotel living in the heart of Victoria, BC. Tucked away in one of the city’s gorgeous residential neighborhoods, just two minutes from the historic Craigdarroch Castle, our hotel places the city’s top attractions at your doorstep, while maintaining a sense of calm and tranquility that sure to relax and inspire you.

Superhost
A queen-sized bed is centered in the room, partially covered with a beige and green comforter. Two wall-mounted lamps provide illumination beside the bed. A full-length mirror is positioned adjacent to a rustic, wooden wall. Light wooden flooring complements the cozy seating area with two chairs.
Hotel room in Port Angeles
4.87 out of 5 average rating, 129 reviews

#6 ✤Perfect Family Retreat- Olympic National Park✤

Our recently remodeled 2 bedroom suite is perfect for a getaway for two couples, or friends! Located in the heart Olympic National Park, each room features a comfy, queen-sized bed. The kitchenette includes a sink, mini-fridge, and microwave and makes for an ideal refreshment area. The full-sized and private bathroom can easily accommodate all guests. (Please note that there is no door between the two rooms.)

Guest favourite
A compact room features a queen size bed dressed in a burgundy coverlet. Wooden wall paneling surrounds the space, complemented by framed landscape artwork. A small dining table with chairs is visible, along with a lamp and a door leading to the outside.
Hotel room in Port Angeles
4.8 out of 5 average rating, 769 reviews

Angeles Motel - Small Room w Queen Bed

Hi, Welcome to Angeles Motel, We are not pet friendly and No Smoking motel, We have Free WIFI, cable TV, guests laundry room and parking lot on premises, Very close to National Park and ferry and 6 blocks away to downtown. We do not welcome the guests with bad reviews, We do not welcome the guests with no reviews, the Guests with bad reviews or with no reviews please try somewhere else, Thanks!

Superhost
Hotel room in Lopez Island
4.91 out of 5 average rating, 111 reviews

•Sweet Island Hotel• Fireplace, Soaking Tub, WIFI

✔ Super Fast WIFI ✔ Fireplace ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom w. Soaking Tub ✔ 24/7 Staff That There When You Need Them and Never When You Don't :) ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ Onsite Bicycle and Kayak rentals We think of every aspect of your stay, and our staff is always there when you need us and never when you don’t.

Popular amenities for San Juan Islands boutique hotels

Destinations to explore